Biology, Medicine and Bioinformatics – MCP servers
47 MCP servers in the category Biology, Medicine and Bioinformatics. Open-source Model Context Protocol (MCP) servers that let AI assistants and agents use external tools and data. Entries come from the community list awesome-mcp-servers; we have not tested each server, so check the repository before you install one.
ajibadedapo/flowproof-mcp
Run reproducible Nextflow bioinformatics pipelines with verifiable Workflow Run RO-Crate provenance: container digests, tool versions and checksums.
ammawla/encode-toolkit
Search, download, track and analyze functional genomics experiments from the ENCODE Project.
cafferychen777/ChatSpatial
Spatial transcriptomics analysis: cell annotation, deconvolution, spatial statistics and visualization.
Crindo2/gph-mcp-server
Match US medical practices with healthcare service vendors for billing, credentialing, EHR, compliance and legal.
davidmosiah/google-health-mcp
Local-first access to the Google Health API for Fitbit and Pixel Watch activity, sleep, heart, nutrition and reconciled health data.
davidmosiah/wellness-cgm-mcp
Local-first continuous glucose monitor data from the Dexcom Developer API and FreeStyle Libre via LibreLink Up.
davidmosiah/wellness-nourish
Nutrition and hydration tracking: food search, barcode lookup, meal estimation, intake logs and daily summaries.
dnaerys/onekgpd-mcp
Real-time access to the 1000 Genomes Project dataset.
ericblair1903/nutrients-mcp
Nutrition analysis from a food photo or text description: calories, macros, vitamins, minerals, allergens and dietary flags.
forever-healthy/evipedia-mcp
Search Evipedia's evidence-based reviews of health and longevity interventions, fetch conclusions and metadata with PMIDs, and suggest new…
fulcradynamics/fulcra-context-mcp
Access personal health and biometric data (sleep stages, heart rate, HRV, glucose, workouts), calendar and location via the Fulcra Life API.
genomoncology/biomcp
Access biomedical research data from PubMed, ClinicalTrials.gov and MyVariant.info.
healthchainai/HealthChain
Typed FHIR tools: build, read, validate and code FHIR resources from a patient bundle, with terminology lookup and machine-readable validation…
helena-bioinformatics/noodle-mcp
Read-only biomedical literature search over a PubMed-derived corpus by natural language or PMID/DOI/PMCID, with citation and semantic graph traversal.
hlydecker/ucsc-genome-mcp
Interact with the UCSC Genome Browser API to find genomes, chromosomes and more.
JamesANZ/medical-mcp
Query medical information, drug databases, drug interactions and clinical guidelines.
JaviMaligno/vitamind-mcp
Estimate solar vitamin D synthesis: whether it happens now, minutes needed by Fitzpatrick skin type and viable months by latitude, using Open-Meteo…
kushaim/practice-fusion-mcp
Read-only FHIR access to the Practice Fusion EHR: search patients and review appointments, conditions, medications and lab results.
longevity-genie/biothings-mcp
Query the BioThings API for genes, genetic variants, drugs and taxonomic information.
longevity-genie/gget-mcp
Bioinformatics toolkit for genomics queries and analysis, wrapping the gget library.
longevity-genie/opengenes-mcp
Query the OpenGenes database for aging and longevity research.
longevity-genie/synergy-age-mcp
Query the SynergyAge database of synergistic and antagonistic genetic interactions in longevity.
mgnirck/lecka-mcp
Race nutrition planning for endurance athletes: carb, sodium and fluid targets plus Lecka product recommendations by race type, conditions and weight.
musharna/plant-genomics-mcp
Plant genomics locus lookup across Ensembl Plants, Phytozome, UniProtKB, KEGG, STRING-DB, NCBI BLAST and more, with batch and cross-source queries.
MyMedi-AI/mymedi-ai-mcp-server
Healthcare billing: ICD-10, CPT and HCPCS code lookup, prior authorization prediction, claims validation, denial-risk scoring and HIPAA compliance…
neptun2000/heor-agent-mcp
Health economics and outcomes research: literature search across PubMed, NICE, CADTH, ICER and more, cost-effectiveness modeling and HTA dossier…
NyxToolsDev/dicom-hl7-mcp-server
Bridge DICOM, HL7v2 and FHIR: cross-standard mapping, Mirth Connect channel generation, vendor private tag decoding and integration patterns.
OHNLP/omop_mcp
Map clinical terminology to OMOP concepts using LLMs for healthcare data standardization and interoperability.
PantelisGeorgiadis/dicomweb-mcp-server
Access a DICOMweb archive: search studies, series and instances, inspect metadata, read structured reports, extract PDF text and render frames.
pkotecha-eng/aria-mcp-server
Clinical research tools for trial coordinators and life sciences teams: real-time access to PubMed and ClinicalTrials.gov.
pubspro/pubmed-search
Search PubMed and summarize biomedical literature.
Rajskij/oura-mcp
Read-only, self-hosted access to Oura Ring sleep, readiness, activity, stress and heart rate data.
rewire-bio/genomics-mcp
Discover EGA, ENA, ENCODE, GEO and NCBI datasets; retrieve bounded reads, variants, sequence and signal from indexed genomic files; and query…
salwks/mcp-techTrend
Academic, code and medical-regulatory trend monitoring across arXiv, PubMed, GitHub, Hugging Face and openFDA, with newspaper-style briefings.
SEOSiri-Official/biorobotics
Bio-robotics engine that converts biological data from the UniProt API into Cartesian G-code coordinates.
SidneyBissoli/medical-terminologies-mcp
Look up medical terminologies: ICD-11, LOINC, RxNorm, MeSH, ATC, Brazil's CID-10 (DataSUS) and optionally SNOMED CT.
sikcapri/superglookoquery
Clinical audit of Glooko diabetes data from any pump or CGM: time in range, GMI, trends and bolus/basal analysis, adapting to the data your devices…
smaniches/alphafold-sovereign-mcp
AlphaFold DB and other public biomedical sources in a local SQLite knowledge graph for structure confidence, variants, diseases, drug targets and…
smaniches/uniprot-mcp
Query the UniProt knowledgebase (entries, features, variants, PTMs, GO terms, cross-references) with per-query SHA-256 provenance and offline replay.
tatsuju/opdstar-nhi-mcp
Taiwan National Health Insurance (NHI) data: rejection codes, ICD-10 to procedure mappings, audit indicators and semantic search over NHI…
the-momentum/apple-health-mcp-server
Access and analyze exported Apple Health data.
the-momentum/fhir-mcp-server
Connect to FHIR servers, for example to query patient history in natural language.
thehealthai/clarity-mcp
Condition-aware safety checks for ingredients, products and supplements, with cited evidence verdicts, claim fact-checking and FDA recall lookup.
thehealthai/fda-risk-radar-mcp
FDA and NHTSA regulatory risk data: device compliance risk, 510(k) evidence, predicate chains, postmarket signals, reimbursement pathways and…
thelongevityvault/decoder-3am-mcp
Classify the likely biological cause of 3am wakeups from symptom descriptions using The Longevity Vault's five-cause framework.
wjgoarxiv/pymol-mcp
Headless PyMOL for molecular visualization, GROMACS/LAMMPS trajectories and clathrate-hydrate cage analysis, including H-bond networks and order…
wso2/fhir-mcp-server
Search, retrieve, create, update and analyze clinical data via FHIR APIs, with SMART-on-FHIR authentication.